J4_9F1D_010
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AGAUGG*CGUUC*GAAGGG*CAGCCGA(PSU)
- Length
- 25 nucleotides
- Bulged bases
- 9F1D|1|B5|A|2315, 9F1D|1|B5|G|2318
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1D|1|B5|A|2294
9F1D|1|B5|G|2295
9F1D|1|B5|A|2296
9F1D|1|B5|U|2297
9F1D|1|B5|G|2298
9F1D|1|B5|G|2299
*
9F1D|1|B5|C|2308
9F1D|1|B5|G|2309
9F1D|1|B5|U|2310
9F1D|1|B5|U|2311
9F1D|1|B5|C|2312
*
9F1D|1|B5|G|2314
9F1D|1|B5|A|2315
9F1D|1|B5|A|2316
9F1D|1|B5|G|2317
9F1D|1|B5|G|2318
9F1D|1|B5|G|2319
*
9F1D|1|B5|C|2344
9F1D|1|B5|A|2345
9F1D|1|B5|G|2346
9F1D|1|B5|C|2347
9F1D|1|B5|C|2348
9F1D|1|B5|G|2349
9F1D|1|B5|A|2350
9F1D|1|B5|PSU|2351
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BG
- Large ribosomal subunit protein eL8
- Chain BN
- Ribosomal protein L15
- Chain BX
- Large ribosomal subunit protein uL23
- Chain Bj
- Ribosomal protein L37
Coloring options: