J4_9F1D_011

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9F1D|1|B5|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|G|2461
9F1D|1|B5|G|2462
*
9F1D|1|B5|U|2480
9F1D|1|B5|G|2481
9F1D|1|B5|U|2482
9F1D|1|B5|G|2483
9F1D|1|B5|A|2484
9F1D|1|B5|A|2485
*
9F1D|1|B5|U|2535
9F1D|1|B5|G|2536
9F1D|1|B5|G|2537
9F1D|1|B5|A|2538
9F1D|1|B5|A|2539
9F1D|1|B5|A|2540
9F1D|1|B5|G|2541
*
9F1D|1|B5|U|2561
9F1D|1|B5|C|2562

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BU

60S ribosomal protein L22

Chain Bg

60S ribosomal protein L34

Chain Bk

60S ribosomal protein L38