J4_9F1D_014

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9F1D|1|B5|A|3980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|C|3977
9F1D|1|B5|U|3978
9F1D|1|B5|A|3979
9F1D|1|B5|A|3980
9F1D|1|B5|G|3981
*
9F1D|1|B5|U|4035
9F1D|1|B5|U|4036
9F1D|1|B5|G|4037
*
9F1D|1|B5|C|4064
9F1D|1|B5|C|4065
*
9F1D|1|B5|G|4074
9F1D|1|B5|G|4075
9F1D|1|B5|G|4076

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain BT

60S ribosomal protein L21

Chain Bo

Large ribosomal subunit protein eL42