J4_9F1D_015
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 9F1D|1|B5|A|3980
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F1D_015 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1811
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F1D|1|B5|C|3977
9F1D|1|B5|U|3978
9F1D|1|B5|A|3979
9F1D|1|B5|A|3980
9F1D|1|B5|G|3981
*
9F1D|1|B5|U|4035
9F1D|1|B5|U|4036
9F1D|1|B5|G|4037
9F1D|1|B5|A|4038
9F1D|1|B5|PSU|4039
*
9F1D|1|B5|A|4063
9F1D|1|B5|C|4064
9F1D|1|B5|C|4065
*
9F1D|1|B5|G|4074
9F1D|1|B5|G|4075
9F1D|1|B5|G|4076
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein uL18
- Chain BT
- 60S ribosomal protein L21
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- Large ribosomal subunit protein eL42
Coloring options: