J4_9FQZ_008

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9FQZ|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FQZ_008 not in the Motif Atlas

Homologous match to J4_9H3G_008

Geometric discrepancy: 0.0889

The information below is about J4_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9FQZ|1|L5|C|3696
9FQZ|1|L5|U|3697
9FQZ|1|L5|G|3698
*
9FQZ|1|L5|C|3752
9FQZ|1|L5|G|3753
*
9FQZ|1|L5|C|3771
9FQZ|1|L5|U|3772
9FQZ|1|L5|U|3773
9FQZ|1|L5|A|3774
9FQZ|1|L5|A|3775
9FQZ|1|L5|G|3776
9FQZ|1|L5|G|3777
9FQZ|1|L5|U|3778
9FQZ|1|L5|A|3779
9FQZ|1|L5|G|3780
*
9FQZ|1|L5|U|3814
9FQZ|1|L5|G|3815
9FQZ|1|L5|A|3816
9FQZ|1|L5|A|3817
9FQZ|1|L5|UY1|3818
9FQZ|1|L5|G|3819

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA