J4_9FRA_002

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAG*UGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|G|123
9FRA|1|2|A|124
9FRA|1|2|G|125
*
9FRA|1|2|C|159
9FRA|1|2|A|160
9FRA|1|2|U|161
9FRA|1|2|A|162
9FRA|1|2|G|163
*
9FRA|1|2|U|191
9FRA|1|2|G|192
9FRA|1|2|A|193
9FRA|1|2|A|194
9FRA|1|2|A|195
9FRA|1|2|G|196
9FRA|1|2|G|197
*
9FRA|1|2|C|224
9FRA|1|2|G|225
9FRA|1|2|C|226

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain J

Small ribosomal subunit protein eS8