3D structure

PDB id
9FRA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCG*CGAAAG*CUGUAAACAAUG*CC
Length
23 nucleotides
Bulged bases
9FRA|1|2|C|535, 9FRA|1|2|A|774, 9FRA|1|2|C|776, 9FRA|1|2|A|778
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRA|1|2|G|534
9FRA|1|2|C|535
9FRA|1|2|G|536
*
9FRA|1|2|C|723
9FRA|1|2|G|724
9FRA|1|2|A|725
9FRA|1|2|A|726
9FRA|1|2|A|727
9FRA|1|2|G|728
*
9FRA|1|2|C|769
9FRA|1|2|U|770
9FRA|1|2|G|771
9FRA|1|2|U|772
9FRA|1|2|A|773
9FRA|1|2|A|774
9FRA|1|2|A|775
9FRA|1|2|C|776
9FRA|1|2|A|777
9FRA|1|2|A|778
9FRA|1|2|U|779
9FRA|1|2|G|780
*
9FRA|1|2|C|842
9FRA|1|2|C|843

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain I
Small ribosomal subunit protein uS8
Chain M
Small ribosomal subunit protein uS11
Chain N
Small ribosomal subunit protein uS12
Chain Q
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein uS17
Chain s
mRNA_Map

Coloring options:

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