J4_9FRK_002

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAG*UGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|G|123
9FRK|1|2|A|124
9FRK|1|2|G|125
*
9FRK|1|2|C|159
9FRK|1|2|A|160
9FRK|1|2|U|161
9FRK|1|2|A|162
9FRK|1|2|G|163
*
9FRK|1|2|U|191
9FRK|1|2|G|192
9FRK|1|2|A|193
9FRK|1|2|A|194
9FRK|1|2|A|195
9FRK|1|2|G|196
9FRK|1|2|G|197
*
9FRK|1|2|C|224
9FRK|1|2|G|225
9FRK|1|2|C|226

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain J

Small ribosomal subunit protein eS8