J4_9FRL_001

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

9FRL|1|2|C|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|G|95
9FRL|1|2|A|96
9FRL|1|2|G|97
9FRL|1|2|U|98
9FRL|1|2|A|99
9FRL|1|2|A|100
9FRL|1|2|C|101
9FRL|1|2|A|102
9FRL|1|2|C|103
*
9FRL|1|2|G|243
9FRL|1|2|G|244
9FRL|1|2|C|245
*
9FRL|1|2|G|291
9FRL|1|2|U|292
9FRL|1|2|A|293
9FRL|1|2|G|294
*
9FRL|1|2|C|316
9FRL|1|2|C|317

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain J

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS12

Chain R

Small ribosomal subunit protein uS17