3D structure

PDB id
9FRL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
Experimental method
ELECTRON MICROSCOPY
Resolution
2.97 Å

Loop

Sequence
GCG*CGAAAG*CUGUAAACAAUG*C(4AC)
Length
23 nucleotides
Bulged bases
9FRL|1|2|C|535, 9FRL|1|2|A|774, 9FRL|1|2|C|776, 9FRL|1|2|A|778
QA status
Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRL|1|2|G|534
9FRL|1|2|C|535
9FRL|1|2|G|536
*
9FRL|1|2|C|723
9FRL|1|2|G|724
9FRL|1|2|A|725
9FRL|1|2|A|726
9FRL|1|2|A|727
9FRL|1|2|G|728
*
9FRL|1|2|C|769
9FRL|1|2|U|770
9FRL|1|2|G|771
9FRL|1|2|U|772
9FRL|1|2|A|773
9FRL|1|2|A|774
9FRL|1|2|A|775
9FRL|1|2|C|776
9FRL|1|2|A|777
9FRL|1|2|A|778
9FRL|1|2|U|779
9FRL|1|2|G|780
*
9FRL|1|2|C|842
9FRL|1|2|4AC|843

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain I
Small ribosomal subunit protein uS8
Chain M
Small ribosomal subunit protein uS11
Chain N
Small ribosomal subunit protein uS12
Chain Q
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein uS17

Coloring options:

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