J4_9FS6_002

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAG*UGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|G|123
9FS6|1|2|A|124
9FS6|1|2|G|125
*
9FS6|1|2|C|159
9FS6|1|2|A|160
9FS6|1|2|U|161
9FS6|1|2|A|162
9FS6|1|2|G|163
*
9FS6|1|2|U|191
9FS6|1|2|G|192
9FS6|1|2|A|193
9FS6|1|2|A|194
9FS6|1|2|A|195
9FS6|1|2|G|196
9FS6|1|2|G|197
*
9FS6|1|2|C|224
9FS6|1|2|G|225
9FS6|1|2|C|226

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain J

Small ribosomal subunit protein eS8