J4_9FSF_002

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAG*UGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|G|123
9FSF|1|2|A|124
9FSF|1|2|G|125
*
9FSF|1|2|C|159
9FSF|1|2|A|160
9FSF|1|2|U|161
9FSF|1|2|A|162
9FSF|1|2|G|163
*
9FSF|1|2|U|191
9FSF|1|2|G|192
9FSF|1|2|A|193
9FSF|1|2|A|194
9FSF|1|2|A|195
9FSF|1|2|G|196
9FSF|1|2|G|197
*
9FSF|1|2|C|224
9FSF|1|2|G|225
9FSF|1|2|C|226

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain E

Small ribosomal subunit protein eS4

Chain J

Small ribosomal subunit protein eS8