J4_9FSF_003
3D structure
- PDB id
- 9FSF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCG*CGAAAG*CUGUAAACAAUG*C(4AC)
- Length
- 23 nucleotides
- Bulged bases
- 9FSF|1|2|C|535, 9FSF|1|2|A|774
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FSF|1|2|G|534
9FSF|1|2|C|535
9FSF|1|2|G|536
*
9FSF|1|2|C|723
9FSF|1|2|G|724
9FSF|1|2|A|725
9FSF|1|2|A|726
9FSF|1|2|A|727
9FSF|1|2|G|728
*
9FSF|1|2|C|769
9FSF|1|2|U|770
9FSF|1|2|G|771
9FSF|1|2|U|772
9FSF|1|2|A|773
9FSF|1|2|A|774
9FSF|1|2|A|775
9FSF|1|2|C|776
9FSF|1|2|A|777
9FSF|1|2|A|778
9FSF|1|2|U|779
9FSF|1|2|G|780
*
9FSF|1|2|C|842
9FSF|1|2|4AC|843
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain I
- Small ribosomal subunit protein uS8
- Chain M
- Small ribosomal subunit protein uS11
- Chain N
- Small ribosomal subunit protein uS12
- Chain Q
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein uS17
- Chain s
- mRNA Map
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