J4_9FSF_004
3D structure
- PDB id
- 9FSF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9FSF|1|4|4SU|8, 9FSF|1|4|U|47, 9FSF|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9FSF_004 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2568
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9FSF|1|4|G|7
9FSF|1|4|4SU|8
9FSF|1|4|G|9
9FSF|1|4|G|10
*
9FSF|1|4|C|25
9FSF|1|4|G|26
9FSF|1|4|U|27
*
9FSF|1|4|A|43
9FSF|1|4|A|44
9FSF|1|4|G|45
9FSF|1|4|A|46
9FSF|1|4|U|47
9FSF|1|4|C|48
9FSF|1|4|G|49
*
9FSF|1|4|C|65
9FSF|1|4|C|66
Current chains
- Chain 4
- tRNA Met initiator
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- Small ribosomal subunit protein uS13
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