J4_9G1Z_004
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9G1Z|1|1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G1Z_004 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.0419
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9G1Z|1|1|G|1488
9G1Z|1|1|G|1489
9G1Z|1|1|U|1490
9G1Z|1|1|U|1491
9G1Z|1|1|C|1492
*
9G1Z|1|1|G|1516
9G1Z|1|1|G|1517
9G1Z|1|1|U|1518
9G1Z|1|1|U|1519
9G1Z|1|1|A|1520
9G1Z|1|1|G|1521
*
9G1Z|1|1|C|1610
9G1Z|1|1|U|1611
*
9G1Z|1|1|A|1825
9G1Z|1|1|G|1826
9G1Z|1|1|U|1827
9G1Z|1|1|C|1828
9G1Z|1|1|G|1829
9G1Z|1|1|U|1830
9G1Z|1|1|A|1831
9G1Z|1|1|C|1832
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AH
- Large ribosomal subunit protein eL34
- Chain AK
- Ribosomal protein L37
- Chain AL
- Ribosomal 60S subunit protein L38
- Chain AM
- 60S ribosomal protein L39
- Chain z
- Ribosomal protein L19
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