J4_9G5D_003
3D structure
- PDB id
- 9G5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome small subunit (State C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9G5D|1|A|A|942, 9G5D|1|A|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G5D_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1803
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G5D|1|A|G|941
9G5D|1|A|A|942
9G5D|1|A|G|943
*
9G5D|1|A|C|1052
9G5D|1|A|A|1053
9G5D|1|A|A|1054
9G5D|1|A|U|1055
9G5D|1|A|A|1056
9G5D|1|A|G|1057
*
9G5D|1|A|C|1098
9G5D|1|A|C|1099
9G5D|1|A|C|1100
9G5D|1|A|U|1101
9G5D|1|A|A|1102
9G5D|1|A|A|1103
9G5D|1|A|A|1104
9G5D|1|A|C|1105
9G5D|1|A|C|1106
9G5D|1|A|U|1107
9G5D|1|A|C|1108
9G5D|1|A|A|1109
*
9G5D|1|A|U|1132
9G5D|1|A|C|1133
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain E
- 28S ribosomal protein S6, mitochondrial
- Chain I
- 28S ribosomal protein S11, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain Q
- 28S ribosomal protein S21, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: