J4_9GGR_008
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9GGR|1|AA|C|576, 9GGR|1|AA|A|815, 9GGR|1|AA|C|817, 9GGR|1|AA|G|818, 9GGR|1|AA|A|819, 9GGR|1|AA|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GGR_008 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1146
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|AA|G|575
9GGR|1|AA|C|576
9GGR|1|AA|G|577
*
9GGR|1|AA|C|764
9GGR|1|AA|G|765
9GGR|1|AA|A|766
9GGR|1|AA|A|767
9GGR|1|AA|A|768
9GGR|1|AA|G|769
*
9GGR|1|AA|C|810
9GGR|1|AA|C|811
9GGR|1|AA|G|812
9GGR|1|AA|U|813
9GGR|1|AA|A|814
9GGR|1|AA|A|815
9GGR|1|AA|A|816
9GGR|1|AA|C|817
9GGR|1|AA|G|818
9GGR|1|AA|A|819
9GGR|1|AA|U|820
9GGR|1|AA|G|821
*
9GGR|1|AA|C|879
9GGR|1|AA|C|880
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AH
- Small ribosomal subunit protein uS8
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AP
- Small ribosomal subunit protein uS17
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain z
- Small ribosomal subunit protein uS12
Coloring options: