J4_9GGR_009
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CGC*GAGGUCA*UU
- Length
- 16 nucleotides
- Bulged bases
- 9GGR|1|AU|U|8, 9GGR|1|AU|U|47, 9GGR|1|AU|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GGR_009 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2589
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9GGR|1|AU|A|7
9GGR|1|AU|U|8
9GGR|1|AU|A|9
9GGR|1|AU|G|10
*
9GGR|1|AU|C|25
9GGR|1|AU|G|26
9GGR|1|AU|C|27
*
9GGR|1|AU|G|43
9GGR|1|AU|A|44
9GGR|1|AU|G|45
9GGR|1|AU|G|46
9GGR|1|AU|U|47
9GGR|1|AU|C|48
9GGR|1|AU|A|49
*
9GGR|1|AU|U|65
9GGR|1|AU|U|66
Current chains
- Chain AU
- P-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- Small ribosomal subunit protein uS13
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 50S ribosomal protein L16
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