J4_9GGR_011

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGC*GCGCG*CAG*CGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GGR|1|AV|G|297
9GGR|1|AV|G|298
9GGR|1|AV|A|299
9GGR|1|AV|A|300
9GGR|1|AV|G|301
9GGR|1|AV|C|302
*
9GGR|1|AV|G|315
9GGR|1|AV|C|316
9GGR|1|AV|G|317
9GGR|1|AV|C|318
9GGR|1|AV|G|319
*
9GGR|1|AV|C|323
9GGR|1|AV|A|324
9GGR|1|AV|G|325
*
9GGR|1|AV|C|337
9GGR|1|AV|G|338
9GGR|1|AV|U|339
9GGR|1|AV|A|340
9GGR|1|AV|C|341

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ap

Large ribosomal subunit protein uL24