J4_9GGR_018

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9GGR|1|AV|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GGR_018 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1068

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9GGR|1|AV|C|1833
9GGR|1|AV|U|1834
9GGR|1|AV|G|1835
*
9GGR|1|AV|C|1905
9GGR|1|AV|G|1906
*
9GGR|1|AV|C|1924
9GGR|1|AV|C|1925
9GGR|1|AV|U|1926
9GGR|1|AV|A|1927
9GGR|1|AV|A|1928
9GGR|1|AV|G|1929
9GGR|1|AV|G|1930
9GGR|1|AV|U|1931
9GGR|1|AV|A|1932
9GGR|1|AV|G|1933
*
9GGR|1|AV|C|1967
9GGR|1|AV|G|1968
9GGR|1|AV|A|1969
9GGR|1|AV|A|1970
9GGR|1|AV|U|1971
9GGR|1|AV|G|1972

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AU

Transfer RNA; tRNA

Chain AX

Large ribosomal subunit protein uL2