J4_9GGR_024

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9GGR|1|N|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GGR_024 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1808

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9GGR|1|N|C|601
9GGR|1|N|A|602
9GGR|1|N|A|603
9GGR|1|N|G|604
*
9GGR|1|N|C|624
9GGR|1|N|G|625
9GGR|1|N|A|626
9GGR|1|N|A|627
9GGR|1|N|G|628
*
9GGR|1|N|C|635
9GGR|1|N|G|636
9GGR|1|N|A|637
9GGR|1|N|G|638
*
9GGR|1|N|C|650
9GGR|1|N|G|651
9GGR|1|N|U|652
9GGR|1|N|U|653
9GGR|1|N|A|654
9GGR|1|N|A|655
9GGR|1|N|G|656

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain Y

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein bL35