J4_9GHA_001

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9GHA|1|8|U|8, 9GHA|1|8|U|47, 9GHA|1|8|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_001 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.1965

The information below is about J4_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9GHA|1|8|G|7
9GHA|1|8|U|8
9GHA|1|8|G|9
9GHA|1|8|G|10
*
9GHA|1|8|C|25
9GHA|1|8|G|26
9GHA|1|8|U|27
*
9GHA|1|8|A|43
9GHA|1|8|A|44
9GHA|1|8|G|45
9GHA|1|8|G|46
9GHA|1|8|U|47
9GHA|1|8|C|48
9GHA|1|8|G|49
*
9GHA|1|8|C|65
9GHA|1|8|C|66

Current chains

Chain 8

tRNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain M

30S ribosomal protein S13