3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9GHA|1|A|C|576, 9GHA|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GHA_004 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.057
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

9GHA|1|A|G|575
9GHA|1|A|C|576
9GHA|1|A|G|577
*
9GHA|1|A|C|764
9GHA|1|A|G|765
9GHA|1|A|A|766
9GHA|1|A|A|767
9GHA|1|A|A|768
9GHA|1|A|G|769
*
9GHA|1|A|C|810
9GHA|1|A|C|811
9GHA|1|A|G|812
9GHA|1|A|U|813
9GHA|1|A|A|814
9GHA|1|A|A|815
9GHA|1|A|A|816
9GHA|1|A|C|817
9GHA|1|A|G|818
9GHA|1|A|A|819
9GHA|1|A|U|820
9GHA|1|A|G|821
*
9GHA|1|A|C|879
9GHA|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4347 s