3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GHA_006 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0432
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

9GHA|1|a|G|297
9GHA|1|a|G|298
9GHA|1|a|A|299
9GHA|1|a|A|300
9GHA|1|a|G|301
*
9GHA|1|a|C|316
9GHA|1|a|G|317
9GHA|1|a|C|318
9GHA|1|a|G|319
*
9GHA|1|a|C|323
9GHA|1|a|A|324
9GHA|1|a|G|325
*
9GHA|1|a|C|337
9GHA|1|a|G|338
9GHA|1|a|U|339
9GHA|1|a|A|340
9GHA|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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