J4_9GHA_007

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9GHA|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1278

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9GHA|1|a|C|601
9GHA|1|a|A|602
9GHA|1|a|A|603
9GHA|1|a|G|604
*
9GHA|1|a|C|624
9GHA|1|a|G|625
9GHA|1|a|A|626
9GHA|1|a|A|627
9GHA|1|a|G|628
*
9GHA|1|a|C|635
9GHA|1|a|G|636
9GHA|1|a|A|637
9GHA|1|a|G|638
*
9GHA|1|a|C|650
9GHA|1|a|G|651
9GHA|1|a|U|652
9GHA|1|a|U|653
9GHA|1|a|A|654
9GHA|1|a|A|655
9GHA|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15