J4_9GHA_013

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9GHA|1|a|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0972

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9GHA|1|a|C|1833
9GHA|1|a|U|1834
9GHA|1|a|2MG|1835
*
9GHA|1|a|C|1905
9GHA|1|a|G|1906
*
9GHA|1|a|C|1924
9GHA|1|a|C|1925
9GHA|1|a|U|1926
9GHA|1|a|A|1927
9GHA|1|a|A|1928
9GHA|1|a|G|1929
9GHA|1|a|G|1930
9GHA|1|a|U|1931
9GHA|1|a|A|1932
9GHA|1|a|G|1933
*
9GHA|1|a|C|1967
9GHA|1|a|G|1968
9GHA|1|a|A|1969
9GHA|1|a|A|1970
9GHA|1|a|U|1971
9GHA|1|a|G|1972

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2