J4_9GHB_009

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GHB|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHB_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0345

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHB|1|a|G|1310
9GHB|1|a|G|1311
9GHB|1|a|U|1312
9GHB|1|a|U|1313
9GHB|1|a|C|1314
*
9GHB|1|a|G|1338
9GHB|1|a|G|1339
9GHB|1|a|U|1340
9GHB|1|a|G|1341
9GHB|1|a|A|1342
9GHB|1|a|G|1343
*
9GHB|1|a|C|1404
9GHB|1|a|U|1405
*
9GHB|1|a|A|1597
9GHB|1|a|A|1598
9GHB|1|a|U|1599
9GHB|1|a|C|1600
9GHB|1|a|G|1601
9GHB|1|a|U|1602
9GHB|1|a|A|1603
9GHB|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23