J4_9GHC_006

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHC_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0587

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHC|1|a|G|297
9GHC|1|a|G|298
9GHC|1|a|A|299
9GHC|1|a|A|300
9GHC|1|a|G|301
*
9GHC|1|a|C|316
9GHC|1|a|G|317
9GHC|1|a|C|318
9GHC|1|a|G|319
*
9GHC|1|a|C|323
9GHC|1|a|A|324
9GHC|1|a|G|325
*
9GHC|1|a|C|337
9GHC|1|a|G|338
9GHC|1|a|U|339
9GHC|1|a|A|340
9GHC|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24