J4_9GHC_009

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GHC|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHC_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.042

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHC|1|a|G|1310
9GHC|1|a|G|1311
9GHC|1|a|U|1312
9GHC|1|a|U|1313
9GHC|1|a|C|1314
*
9GHC|1|a|G|1338
9GHC|1|a|G|1339
9GHC|1|a|U|1340
9GHC|1|a|G|1341
9GHC|1|a|A|1342
9GHC|1|a|G|1343
*
9GHC|1|a|C|1404
9GHC|1|a|U|1405
*
9GHC|1|a|A|1597
9GHC|1|a|A|1598
9GHC|1|a|U|1599
9GHC|1|a|C|1600
9GHC|1|a|G|1601
9GHC|1|a|U|1602
9GHC|1|a|A|1603
9GHC|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23