J4_9GHD_006

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0455

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHD|1|a|G|297
9GHD|1|a|G|298
9GHD|1|a|A|299
9GHD|1|a|A|300
9GHD|1|a|G|301
*
9GHD|1|a|C|316
9GHD|1|a|G|317
9GHD|1|a|C|318
9GHD|1|a|G|319
*
9GHD|1|a|C|323
9GHD|1|a|A|324
9GHD|1|a|G|325
*
9GHD|1|a|C|337
9GHD|1|a|G|338
9GHD|1|a|U|339
9GHD|1|a|A|340
9GHD|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24