3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
9GHD|1|a|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GHD_009 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0354
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9GHD|1|a|G|1310
9GHD|1|a|G|1311
9GHD|1|a|U|1312
9GHD|1|a|U|1313
9GHD|1|a|C|1314
*
9GHD|1|a|G|1338
9GHD|1|a|G|1339
9GHD|1|a|U|1340
9GHD|1|a|G|1341
9GHD|1|a|A|1342
9GHD|1|a|G|1343
*
9GHD|1|a|C|1404
9GHD|1|a|U|1405
*
9GHD|1|a|A|1597
9GHD|1|a|A|1598
9GHD|1|a|U|1599
9GHD|1|a|C|1600
9GHD|1|a|G|1601
9GHD|1|a|U|1602
9GHD|1|a|A|1603
9GHD|1|a|C|1604

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain s
50S ribosomal protein L23

Coloring options:


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