J4_9GHD_009

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GHD|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0354

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHD|1|a|G|1310
9GHD|1|a|G|1311
9GHD|1|a|U|1312
9GHD|1|a|U|1313
9GHD|1|a|C|1314
*
9GHD|1|a|G|1338
9GHD|1|a|G|1339
9GHD|1|a|U|1340
9GHD|1|a|G|1341
9GHD|1|a|A|1342
9GHD|1|a|G|1343
*
9GHD|1|a|C|1404
9GHD|1|a|U|1405
*
9GHD|1|a|A|1597
9GHD|1|a|A|1598
9GHD|1|a|U|1599
9GHD|1|a|C|1600
9GHD|1|a|G|1601
9GHD|1|a|U|1602
9GHD|1|a|A|1603
9GHD|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

50S ribosomal protein L23