J4_9GHE_009

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GHE|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHE_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0321

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHE|1|a|G|1310
9GHE|1|a|G|1311
9GHE|1|a|U|1312
9GHE|1|a|U|1313
9GHE|1|a|C|1314
*
9GHE|1|a|G|1338
9GHE|1|a|G|1339
9GHE|1|a|U|1340
9GHE|1|a|G|1341
9GHE|1|a|A|1342
9GHE|1|a|G|1343
*
9GHE|1|a|C|1404
9GHE|1|a|U|1405
*
9GHE|1|a|A|1597
9GHE|1|a|A|1598
9GHE|1|a|U|1599
9GHE|1|a|C|1600
9GHE|1|a|G|1601
9GHE|1|a|U|1602
9GHE|1|a|A|1603
9GHE|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23