J4_9GHF_009

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GHF|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.036

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|G|1310
9GHF|1|a|G|1311
9GHF|1|a|U|1312
9GHF|1|a|U|1313
9GHF|1|a|C|1314
*
9GHF|1|a|G|1338
9GHF|1|a|G|1339
9GHF|1|a|U|1340
9GHF|1|a|G|1341
9GHF|1|a|A|1342
9GHF|1|a|G|1343
*
9GHF|1|a|C|1404
9GHF|1|a|U|1405
*
9GHF|1|a|A|1597
9GHF|1|a|A|1598
9GHF|1|a|U|1599
9GHF|1|a|C|1600
9GHF|1|a|G|1601
9GHF|1|a|U|1602
9GHF|1|a|A|1603
9GHF|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23