J4_9GHG_002
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CGAAU*AAUC*GAA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GHG_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0728
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GHG|1|A|C|340
9GHG|1|A|G|341
9GHG|1|A|A|342
9GHG|1|A|A|343
9GHG|1|A|U|344
*
9GHG|1|A|A|359
9GHG|1|A|A|360
9GHG|1|A|U|361
9GHG|1|A|C|362
*
9GHG|1|A|G|366
9GHG|1|A|A|367
9GHG|1|A|A|368
*
9GHG|1|A|U|380
9GHG|1|A|G|381
9GHG|1|A|U|382
9GHG|1|A|A|383
9GHG|1|A|G|384
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L24
Coloring options: