J4_9GHG_012

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9GHG|1|D|U|8, 9GHG|1|D|U|47, 9GHG|1|D|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHG_012 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.253

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

9GHG|1|D|G|7
9GHG|1|D|U|8
9GHG|1|D|G|9
9GHG|1|D|G|10
*
9GHG|1|D|C|25
9GHG|1|D|G|26
9GHG|1|D|U|27
*
9GHG|1|D|A|43
9GHG|1|D|A|44
9GHG|1|D|G|45
9GHG|1|D|G|46
9GHG|1|D|U|47
9GHG|1|D|C|48
9GHG|1|D|G|49
*
9GHG|1|D|C|65
9GHG|1|D|C|66

Current chains

Chain D

E-site tRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL33A

Chain h

30S ribosomal protein S7

Chain l

30S ribosomal protein S11