J4_9GHG_013
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9GHG|1|F|U|8, 9GHG|1|F|U|47, 9GHG|1|F|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GHG_013 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2025
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9GHG|1|F|G|7
9GHG|1|F|U|8
9GHG|1|F|G|9
9GHG|1|F|G|10
*
9GHG|1|F|C|25
9GHG|1|F|G|26
9GHG|1|F|U|27
*
9GHG|1|F|A|43
9GHG|1|F|A|44
9GHG|1|F|G|45
9GHG|1|F|G|46
9GHG|1|F|U|47
9GHG|1|F|C|48
9GHG|1|F|G|49
*
9GHG|1|F|C|65
9GHG|1|F|C|66
Current chains
- Chain F
- E-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain n
- 30S ribosomal protein S13
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