J4_9GHG_015

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

9GHG|1|a|U|183, 9GHG|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHG|1|a|G|142
9GHG|1|a|A|143
9GHG|1|a|C|144
*
9GHG|1|a|G|178
9GHG|1|a|A|179
9GHG|1|a|U|180
9GHG|1|a|A|181
9GHG|1|a|A|182
9GHG|1|a|U|183
9GHG|1|a|A|184
9GHG|1|a|U|185
*
9GHG|1|a|A|206
9GHG|1|a|G|207
9GHG|1|a|U|208
9GHG|1|a|G|209
9GHG|1|a|A|210
9GHG|1|a|A|211
9GHG|1|a|A|212
9GHG|1|a|G|213
*
9GHG|1|a|C|227
9GHG|1|a|A|228
9GHG|1|a|C|229

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20