J4_9GR1_004
3D structure
- PDB id
- 9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-TEC complex in delivery state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9GR1|1|Y|4SU|8, 9GR1|1|Y|U|47, 9GR1|1|Y|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GR1_004 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1728
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9GR1|1|Y|G|7
9GR1|1|Y|4SU|8
9GR1|1|Y|G|9
9GR1|1|Y|G|10
*
9GR1|1|Y|C|25
9GR1|1|Y|G|26
9GR1|1|Y|U|27
*
9GR1|1|Y|A|43
9GR1|1|Y|A|44
9GR1|1|Y|G|45
9GR1|1|Y|A|46
9GR1|1|Y|U|47
9GR1|1|Y|C|48
9GR1|1|Y|G|49
*
9GR1|1|Y|C|65
9GR1|1|Y|C|66
Current chains
- Chain Y
- tRNA(fmet) P-site
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: