J4_9GR1_010

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9GR1|1|a|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GR1_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0336

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GR1|1|a|G|1312
9GR1|1|a|G|1313
9GR1|1|a|U|1314
9GR1|1|a|U|1315
9GR1|1|a|C|1316
*
9GR1|1|a|G|1340
9GR1|1|a|G|1341
9GR1|1|a|U|1342
9GR1|1|a|G|1343
9GR1|1|a|A|1344
9GR1|1|a|G|1345
*
9GR1|1|a|C|1406
9GR1|1|a|U|1407
*
9GR1|1|a|A|1599
9GR1|1|a|A|1600
9GR1|1|a|U|1601
9GR1|1|a|C|1602
9GR1|1|a|G|1603
9GR1|1|a|U|1604
9GR1|1|a|A|1605
9GR1|1|a|C|1606

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23