3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9GUQ|1|A|C|576, 9GUQ|1|A|A|815, 9GUQ|1|A|C|817, 9GUQ|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GUQ_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.075
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

9GUQ|1|A|G|575
9GUQ|1|A|C|576
9GUQ|1|A|G|577
*
9GUQ|1|A|C|764
9GUQ|1|A|G|765
9GUQ|1|A|A|766
9GUQ|1|A|A|767
9GUQ|1|A|A|768
9GUQ|1|A|G|769
*
9GUQ|1|A|C|810
9GUQ|1|A|C|811
9GUQ|1|A|G|812
9GUQ|1|A|U|813
9GUQ|1|A|A|814
9GUQ|1|A|A|815
9GUQ|1|A|A|816
9GUQ|1|A|C|817
9GUQ|1|A|G|818
9GUQ|1|A|A|819
9GUQ|1|A|U|820
9GUQ|1|A|G|821
*
9GUQ|1|A|C|879
9GUQ|1|A|C|880

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S8
Chain M
30S ribosomal protein S12
Chain P
Small ribosomal subunit protein uS15
Chain R
30S ribosomal protein S17
Chain V
30S ribosomal protein S21

Coloring options:


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