3D structure

PDB id
9GUS (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex TEC resolved (30S only)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9GUS|1|A|C|576, 9GUS|1|A|A|815, 9GUS|1|A|C|817, 9GUS|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GUS_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0743
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

9GUS|1|A|G|575
9GUS|1|A|C|576
9GUS|1|A|G|577
*
9GUS|1|A|C|764
9GUS|1|A|G|765
9GUS|1|A|A|766
9GUS|1|A|A|767
9GUS|1|A|A|768
9GUS|1|A|G|769
*
9GUS|1|A|C|810
9GUS|1|A|C|811
9GUS|1|A|G|812
9GUS|1|A|U|813
9GUS|1|A|A|814
9GUS|1|A|A|815
9GUS|1|A|A|816
9GUS|1|A|C|817
9GUS|1|A|G|818
9GUS|1|A|A|819
9GUS|1|A|U|820
9GUS|1|A|G|821
*
9GUS|1|A|C|879
9GUS|1|A|C|880

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S8
Chain M
30S ribosomal protein S12
Chain P
Small ribosomal subunit protein uS15
Chain R
30S ribosomal protein S17
Chain V
30S ribosomal protein S21

Coloring options:


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