J4_9GY4_003

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9GY4|1|5|G|1271, 9GY4|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|5|C|981
9GY4|1|5|U|982
9GY4|1|5|C|983
*
9GY4|1|5|G|1070
9GY4|1|5|C|1071
9GY4|1|5|C|1072
*
9GY4|1|5|G|1240
9GY4|1|5|C|1241
9GY4|1|5|G|1242
9GY4|1|5|C|1243
*
9GY4|1|5|G|1268
9GY4|1|5|G|1269
9GY4|1|5|A|1270
9GY4|1|5|G|1271
9GY4|1|5|C|1272
9GY4|1|5|G|1273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

60S ribosomal protein L29