J4_9GY4_005
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9GY4|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GY4_005 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.0848
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9GY4|1|5|G|2406
9GY4|1|5|G|2407
9GY4|1|5|U|2408
9GY4|1|5|U|2409
9GY4|1|5|C|2410
*
9GY4|1|5|G|2434
9GY4|1|5|G|2435
9GY4|1|5|U|2436
9GY4|1|5|C|2437
9GY4|1|5|A|2438
9GY4|1|5|G|2439
*
9GY4|1|5|U|2538
9GY4|1|5|C|2539
*
9GY4|1|5|G|2777
9GY4|1|5|G|2778
9GY4|1|5|C|2779
9GY4|1|5|C|2780
9GY4|1|5|G|2781
9GY4|1|5|U|2782
9GY4|1|5|A|2783
9GY4|1|5|C|2784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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