J4_9GY4_006

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9GY4|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|5|G|2618
9GY4|1|5|G|2619
*
9GY4|1|5|U|2637
9GY4|1|5|G|2638
9GY4|1|5|U|2639
9GY4|1|5|G|2640
9GY4|1|5|A|2641
9GY4|1|5|A|2642
*
9GY4|1|5|U|2692
9GY4|1|5|G|2693
9GY4|1|5|G|2694
9GY4|1|5|A|2695
9GY4|1|5|A|2696
9GY4|1|5|A|2697
9GY4|1|5|G|2698
*
9GY4|1|5|U|2718
9GY4|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38