J4_9GY4_008
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9GY4|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GY4_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1285
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9GY4|1|5|C|3696
9GY4|1|5|U|3697
9GY4|1|5|G|3698
*
9GY4|1|5|C|3752
9GY4|1|5|G|3753
*
9GY4|1|5|C|3771
9GY4|1|5|U|3772
9GY4|1|5|U|3773
9GY4|1|5|A|3774
9GY4|1|5|A|3775
9GY4|1|5|G|3776
9GY4|1|5|G|3777
9GY4|1|5|U|3778
9GY4|1|5|A|3779
9GY4|1|5|G|3780
*
9GY4|1|5|U|3814
9GY4|1|5|G|3815
9GY4|1|5|A|3816
9GY4|1|5|A|3817
9GY4|1|5|U|3818
9GY4|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain a
- 60S ribosomal protein L8
Coloring options: