J4_9H0L_004

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9H0L|1|V|U|8, 9H0L|1|V|U|47, 9H0L|1|V|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H0L_004 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2239

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9H0L|1|V|G|7
9H0L|1|V|U|8
9H0L|1|V|G|9
9H0L|1|V|G|10
*
9H0L|1|V|C|25
9H0L|1|V|G|26
9H0L|1|V|U|27
*
9H0L|1|V|A|43
9H0L|1|V|A|44
9H0L|1|V|G|45
9H0L|1|V|G|46
9H0L|1|V|U|47
9H0L|1|V|C|48
9H0L|1|V|G|49
*
9H0L|1|V|C|65
9H0L|1|V|C|66

Current chains

Chain V

tRNA(fMet)

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain G

Small ribosomal subunit protein uS7