J4_9H0L_007

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H0L_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0498

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9H0L|1|a|G|297
9H0L|1|a|G|298
9H0L|1|a|A|299
9H0L|1|a|A|300
9H0L|1|a|G|301
*
9H0L|1|a|C|316
9H0L|1|a|G|317
9H0L|1|a|C|318
9H0L|1|a|G|319
*
9H0L|1|a|C|323
9H0L|1|a|A|324
9H0L|1|a|G|325
*
9H0L|1|a|C|337
9H0L|1|a|G|338
9H0L|1|a|U|339
9H0L|1|a|A|340
9H0L|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24