J4_9H3S_002

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9H3S|1|A|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3S_002 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1485

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9H3S|1|A|C|601
9H3S|1|A|A|602
9H3S|1|A|A|603
9H3S|1|A|G|604
*
9H3S|1|A|C|624
9H3S|1|A|G|625
9H3S|1|A|A|626
9H3S|1|A|A|627
9H3S|1|A|G|628
*
9H3S|1|A|C|635
9H3S|1|A|G|636
9H3S|1|A|A|637
9H3S|1|A|G|638
*
9H3S|1|A|C|650
9H3S|1|A|G|651
9H3S|1|A|U|652
9H3S|1|A|U|653
9H3S|1|A|A|654
9H3S|1|A|A|655
9H3S|1|A|G|656

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15