J4_9H3V_005

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9H3V|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3V_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1227

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9H3V|1|A|G|1310
9H3V|1|A|G|1311
9H3V|1|A|U|1312
9H3V|1|A|U|1313
9H3V|1|A|C|1314
*
9H3V|1|A|G|1338
9H3V|1|A|G|1339
9H3V|1|A|U|1340
9H3V|1|A|G|1341
9H3V|1|A|A|1342
9H3V|1|A|G|1343
*
9H3V|1|A|C|1404
9H3V|1|A|U|1405
*
9H3V|1|A|A|1597
9H3V|1|A|A|1598
9H3V|1|A|U|1599
9H3V|1|A|C|1600
9H3V|1|A|G|1601
9H3V|1|A|U|1602
9H3V|1|A|A|1603
9H3V|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23