J4_9H4N_001

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9H4N|1|A2|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|111
9H4N|1|A2|C|112
*
9H4N|1|A2|G|278
9H4N|1|A2|A|279
9H4N|1|A2|G|280
9H4N|1|A2|U|281
9H4N|1|A2|C|282
9H4N|1|A2|G|283
*
9H4N|1|A2|C|304
9H4N|1|A2|A|305
9H4N|1|A2|A|306
9H4N|1|A2|A|307
9H4N|1|A2|G|308
9H4N|1|A2|C|309
9H4N|1|A2|G|310
*
9H4N|1|A2|U|327
9H4N|1|A2|A|328
9H4N|1|A2|A|329
9H4N|1|A2|G|330

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain H1

60S ribosomal protein L15

Chain b2

Large ribosomal subunit protein uL29

Chain c2

Large ribosomal subunit protein eL36